Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   L_RS02090 Genome accession   NC_002662
Coordinates   405548..406330 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 400548..411330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS02065 (L582) vicX 400571..401383 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  L_RS02070 (L0124) vicK 401554..402996 (-) 1443 WP_010905315.1 sensor histidine kinase Regulator
  L_RS02075 (L0125) yycF 402989..403690 (-) 702 WP_003131580.1 response regulator YycF -
  L_RS02080 (L3846) tmk 403868..404503 (+) 636 WP_003131575.1 dTMP kinase -
  L_RS02085 (L0280) - 404636..405496 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  L_RS02090 (L5532) yaaT 405548..406330 (+) 783 WP_010905316.1 PSP1 domain-containing protein Regulator
  L_RS02095 (L6328) yabA 406323..406649 (+) 327 WP_010905317.1 DNA replication initiation control protein YabA -
  L_RS02100 (L6615) rsmI 406649..407524 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L_RS02105 (L7612) - 407601..407792 (-) 192 WP_003131566.1 hypothetical protein -
  L_RS02110 (L7866) mvk 407855..408787 (-) 933 WP_003131564.1 mevalonate kinase -
  L_RS02115 (L9089) mvaD 409093..410049 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  L_RS02120 (L10014) - 410036..411025 (+) 990 WP_003131562.1 mevalonate kinase family protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=21350 L_RS02090 WP_010905316.1 405548..406330(+) (yaaT) [Lactococcus lactis subsp. lactis Il1403]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=21350 L_RS02090 WP_010905316.1 405548..406330(+) (yaaT) [Lactococcus lactis subsp. lactis Il1403]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388

Multiple sequence alignment