Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS543_RS06020 Genome accession   NZ_CP024600
Coordinates   1333812..1334504 (-) Length   230 a.a.
NCBI ID   WP_005875233.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328812..1339504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS543_RS06010 (CS543_06000) - 1329116..1330807 (+) 1692 WP_005874233.1 alkaline phosphatase -
  CS543_RS11830 - 1331375..1331548 (-) 174 WP_165385078.1 hypothetical protein -
  CS543_RS06015 (CS543_06005) hcp 1331936..1333588 (-) 1653 WP_077084462.1 hydroxylamine reductase -
  CS543_RS06020 (CS543_06010) radC 1333812..1334504 (-) 693 WP_005875233.1 DNA repair protein RadC Machinery gene
  CS543_RS06030 (CS543_06020) - 1335026..1336324 (-) 1299 WP_099809351.1 Y-family DNA polymerase -
  CS543_RS06035 (CS543_06025) - 1336332..1336757 (-) 426 WP_013816657.1 LexA family transcriptional regulator -
  CS543_RS06040 (CS543_06030) - 1337070..1337252 (-) 183 WP_021679899.1 hypothetical protein -
  CS543_RS06045 (CS543_06035) - 1337726..1338190 (+) 465 WP_077084464.1 NfeD family protein -
  CS543_RS06050 (CS543_06040) - 1338218..1339198 (+) 981 WP_004585525.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25521.49 Da        Isoelectric Point: 7.0538

>NTDB_id=213473 CS543_RS06020 WP_005875233.1 1333812..1334504(-) (radC) [Porphyromonas gingivalis strain KCOM 2801]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=213473 CS543_RS06020 WP_005875233.1 1333812..1334504(-) (radC) [Porphyromonas gingivalis strain KCOM 2801]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGCGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37