Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CS388_RS01425 Genome accession   NZ_CP024599
Coordinates   292891..293754 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain KCOM 2800     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 287891..298754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS388_RS01400 (CS388_01380) - 288150..289367 (-) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  CS388_RS01405 (CS388_01385) - 289370..291325 (-) 1956 WP_099840559.1 LptF/LptG family permease -
  CS388_RS01410 (CS388_01390) rplI 291601..292140 (-) 540 WP_004585134.1 50S ribosomal protein L9 -
  CS388_RS01415 (CS388_01395) rpsR 292165..292437 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  CS388_RS01420 (CS388_01400) rpsF 292441..292794 (-) 354 WP_004585132.1 30S ribosomal protein S6 -
  CS388_RS01425 (CS388_01405) rpoS 292891..293754 (-) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  CS388_RS01430 (CS388_01410) - 293944..295440 (-) 1497 WP_099840558.1 DegQ family serine endoprotease -
  CS388_RS01435 (CS388_01415) - 295657..295914 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  CS388_RS10140 - 296135..296314 (+) 180 WP_230482496.1 DUF1661 domain-containing protein -
  CS388_RS01440 (CS388_01420) guaA 296640..298160 (+) 1521 WP_012457664.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=213426 CS388_RS01425 WP_004585131.1 292891..293754(-) (rpoS) [Porphyromonas gingivalis strain KCOM 2800]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=213426 CS388_RS01425 WP_004585131.1 292891..293754(-) (rpoS) [Porphyromonas gingivalis strain KCOM 2800]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366