Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CS374_RS07965 Genome accession   NZ_CP024598
Coordinates   1758901..1759764 (+) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain KCOM 2798     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753901..1764764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS374_RS07950 (CS374_07915) guaA 1754505..1756025 (-) 1521 WP_077492189.1 glutamine-hydrolyzing GMP synthase -
  CS374_RS12155 - 1756341..1756526 (-) 186 WP_143733785.1 DUF1661 domain-containing protein -
  CS374_RS07955 (CS374_07920) - 1756741..1756998 (+) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  CS374_RS07960 (CS374_07925) - 1757215..1758711 (+) 1497 WP_021662342.1 DegQ family serine endoprotease -
  CS374_RS07965 (CS374_07930) rpoS 1758901..1759764 (+) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  CS374_RS07970 (CS374_07935) rpsF 1759861..1760214 (+) 354 WP_004585132.1 30S ribosomal protein S6 -
  CS374_RS07975 (CS374_07940) rpsR 1760218..1760490 (+) 273 WP_004585133.1 30S ribosomal protein S18 -
  CS374_RS07980 (CS374_07945) rplI 1760515..1761054 (+) 540 WP_005874868.1 50S ribosomal protein L9 -
  CS374_RS07985 (CS374_07950) - 1761330..1763285 (+) 1956 WP_099841483.1 LptF/LptG family permease -
  CS374_RS07990 (CS374_07955) - 1763288..1764505 (+) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=213415 CS374_RS07965 WP_004585131.1 1758901..1759764(+) (rpoS) [Porphyromonas gingivalis strain KCOM 2798]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=213415 CS374_RS07965 WP_004585131.1 1758901..1759764(+) (rpoS) [Porphyromonas gingivalis strain KCOM 2798]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATTGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366