Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS374_RS00935 Genome accession   NZ_CP024598
Coordinates   199882..200574 (+) Length   230 a.a.
NCBI ID   WP_004584127.1    Uniprot ID   B2RJM0
Organism   Porphyromonas gingivalis strain KCOM 2798     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194882..205574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS374_RS00925 (CS374_00915) - 195589..198795 (-) 3207 WP_099841096.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  CS374_RS00935 (CS374_00925) radC 199882..200574 (+) 693 WP_004584127.1 DNA repair protein RadC Machinery gene
  CS374_RS00940 (CS374_00930) hcp 200799..202451 (+) 1653 WP_099841097.1 hydroxylamine reductase -
  CS374_RS11300 - 202839..203012 (+) 174 WP_173568180.1 hypothetical protein -
  CS374_RS00945 (CS374_00935) - 203580..205271 (-) 1692 WP_097552503.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25549.54 Da        Isoelectric Point: 7.0538

>NTDB_id=213394 CS374_RS00935 WP_004584127.1 199882..200574(+) (radC) [Porphyromonas gingivalis strain KCOM 2798]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGVYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=213394 CS374_RS00935 WP_004584127.1 199882..200574(+) (radC) [Porphyromonas gingivalis strain KCOM 2798]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGTGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGTATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RJM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37