Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L_RS00555 Genome accession   NC_002662
Coordinates   98429..99214 (-) Length   261 a.a.
NCBI ID   WP_010905109.1    Uniprot ID   Q9CJA4
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 93429..104214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS00525 (L94197) - 94319..94621 (+) 303 WP_165842620.1 hypothetical protein -
  L_RS00530 (L94845) - 94841..95143 (-) 303 WP_003132256.1 hypothetical protein -
  L_RS00535 - 95145..95312 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  L_RS00540 (L0096) rpmG 95879..96028 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  L_RS00545 (L00096) rpmF 96058..96231 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  L_RS00550 (L96595) - 96595..98376 (+) 1782 WP_010905108.1 heavy metal translocating P-type ATPase -
  L_RS00555 (L0210) spo0J 98429..99214 (-) 786 WP_010905109.1 ParB/RepB/Spo0J family partition protein Regulator
  L_RS00560 (L99272) rarA 99269..100528 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  L_RS00565 (L100575) - 100572..101060 (-) 489 WP_010905111.1 GNAT family N-acetyltransferase -
  L_RS00570 (L101209) - 101212..101679 (+) 468 WP_010905112.1 DUF3013 family protein -
  L_RS00575 (L101706) - 101709..103262 (+) 1554 WP_010905113.1 ABC-F family ATP-binding cassette domain-containing protein -
  L_RS00580 (L103321) - 103393..103677 (+) 285 WP_010905114.1 hypothetical protein -
  L_RS00585 (L103661) - 103715..104203 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29803.67 Da        Isoelectric Point: 9.5731

>NTDB_id=21338 L_RS00555 WP_010905109.1 98429..99214(-) (spo0J) [Lactococcus lactis subsp. lactis Il1403]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKFTDKSISKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=21338 L_RS00555 WP_010905109.1 98429..99214(-) (spo0J) [Lactococcus lactis subsp. lactis Il1403]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAATTTACTGACAAATCTATCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471

Multiple sequence alignment