Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BVG18_RS02540 Genome accession   NZ_CP019143
Coordinates   520825..521682 (+) Length   285 a.a.
NCBI ID   WP_216986319.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ZS207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515825..526682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS02515 (BVG18_08125) - 516478..517266 (+) 789 Protein_479 CsgG/HfaB family protein -
  BVG18_RS02520 (BVG18_08130) - 517351..518025 (+) 675 WP_086044458.1 hypothetical protein -
  BVG18_RS02525 (BVG18_08135) - 518337..518912 (-) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  BVG18_RS02530 (BVG18_08140) - 519001..519714 (-) 714 WP_086044459.1 DUF3108 domain-containing protein -
  BVG18_RS02535 (BVG18_08145) - 519874..520560 (-) 687 WP_086044460.1 hypothetical protein -
  BVG18_RS02540 (BVG18_08150) tonB2 520825..521682 (+) 858 WP_216986319.1 TonB family protein Machinery gene
  BVG18_RS02545 (BVG18_08155) ybeY 521866..522348 (-) 483 WP_005248173.1 rRNA maturation RNase YbeY -
  BVG18_RS02550 (BVG18_08160) - 522371..523447 (-) 1077 WP_004732214.1 PhoH family protein -
  BVG18_RS02555 (BVG18_08165) miaB 523485..524942 (-) 1458 WP_005249941.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32661.02 Da        Isoelectric Point: 5.7562

>NTDB_id=213377 BVG18_RS02540 WP_216986319.1 520825..521682(+) (tonB2) [Acinetobacter lwoffii strain ZS207]
MPLVRTWWKDPVFSSAVLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKASVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=213377 BVG18_RS02540 WP_216986319.1 520825..521682(+) (tonB2) [Acinetobacter lwoffii strain ZS207]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACCCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCAGTCAGTTTGCGCCAGACTGATG
AAAAAATTGAGCATGCTGATTTTCTCGCCCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAAGCTCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAACAACATGCAGGCGAAGAGCTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCGGAAGAAAATCAGCGAAAAAAAA
TGCAGGAGCAATTACAGAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTAGATGGTATTCAGTCCAAGCAGGATGTTTCTGCCGCCTATCTGGA
AAAGTTTCGCGAGAAAGTGGAGTTCTATGGGAACCGTTATTATCCGGAAGCAGCCAAACAACAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTGATCCTGAACCAGAATGGCGGGATTCGTGCCATTCGACTGATTGACAGTTCGGGACATGCCATGCTG
GATGAAGCAGCCAAAGCTTCCGTGCGTAAGGCAGCGCCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGAGTGATTCGTACCTGGCGTTTTGACCCGGCAGAAGCGGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.477

97.895

0.719

Multiple sequence alignment