Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L_RS00350 Genome accession   NC_002662
Coordinates   57858..58613 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52858..63613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS00330 (L55129) - 55147..55389 (-) 243 Protein_56 SulP family inorganic anion transporter -
  L_RS00335 (L1005) - 55599..56120 (+) 522 WP_010905072.1 GNAT family N-acetyltransferase -
  L_RS00345 (L56488) - 56584..57759 (+) 1176 WP_010905073.1 pyridoxal phosphate-dependent aminotransferase -
  L_RS00350 (L1006) recO 57858..58613 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  L_RS00355 - 58727..58900 (+) 174 WP_021214949.1 helix-turn-helix domain-containing protein -
  L_RS00360 (L0036) lpdA 58971..60389 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  L_RS00365 (L0035) - 60583..62181 (-) 1599 WP_010905075.1 2-oxo acid dehydrogenase subunit E2 -
  L_RS00370 (L0034) - 62174..63154 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=21336 L_RS00350 WP_003132217.1 57858..58613(+) (recO) [Lactococcus lactis subsp. lactis Il1403]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=21336 L_RS00350 WP_003132217.1 57858..58613(+) (recO) [Lactococcus lactis subsp. lactis Il1403]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534