Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS549_RS10190 Genome accession   NZ_CP024596
Coordinates   2279633..2280325 (+) Length   230 a.a.
NCBI ID   WP_005875233.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 3131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2274633..2285325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS549_RS10180 (CS549_10105) - 2276054..2279260 (-) 3207 WP_099838840.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  CS549_RS10190 (CS549_10115) radC 2279633..2280325 (+) 693 WP_005875233.1 DNA repair protein RadC Machinery gene
  CS549_RS10195 (CS549_10120) hcp 2280550..2282202 (+) 1653 WP_099838842.1 hydroxylamine reductase -
  CS549_RS11035 - 2282589..2282762 (+) 174 WP_173568180.1 hypothetical protein -
  CS549_RS10200 (CS549_10125) - 2283331..2285022 (-) 1692 WP_099838844.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25521.49 Da        Isoelectric Point: 7.0538

>NTDB_id=213358 CS549_RS10190 WP_005875233.1 2279633..2280325(+) (radC) [Porphyromonas gingivalis strain KCOM 3131]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=213358 CS549_RS10190 WP_005875233.1 2279633..2280325(+) (radC) [Porphyromonas gingivalis strain KCOM 3131]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGCGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCGACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37