Detailed information NTG0213340

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC54_RS13780
• Genome accession: NZ_CP019121
• Coordinates: 2730335..2731327 (-)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_054
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2725335..2736327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC54_RS13760 (FORC54_2492)	recX	2725359..2725820 (-)	462	WP_038964353.1	recombination regulator RecX	-
FORC54_RS13765 (FORC54_2493)	recA	2725929..2726978 (-)	1050	WP_038941440.1	recombinase RecA	Machinery gene
FORC54_RS13770 (FORC54_2494)	pncC	2727111..2727614 (-)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
FORC54_RS13775 (FORC54_2495)	mutS	2727698..2730259 (+)	2562	WP_101958942.1	DNA mismatch repair protein MutS	-
FORC54_RS13780 (FORC54_2496)	rpoS	2730335..2731327 (-)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
FORC54_RS13785 (FORC54_2497)	-	2731408..2732304 (-)	897	WP_101958943.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC54_RS13790 (FORC54_2498)	-	2732348..2732974 (-)	627	WP_101958944.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC54_RS13795 (FORC54_2499)	surE	2732977..2733744 (-)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
FORC54_RS13800 (FORC54_2500)	truD	2733750..2734793 (-)	1044	WP_039536055.1	tRNA pseudouridine(13) synthase TruD	-
FORC54_RS13805 (FORC54_2501)	ispF	2734829..2735305 (-)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC54_RS13810 (FORC54_2502)	ispD	2735302..2736015 (-)	714	WP_038941446.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC54_RS13815 (FORC54_2503)	ftsB	2736015..2736296 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=213340 FORC54_RS13780 WP_017420278.1 2730335..2731327(-) (rpoS) [Vibrio vulnificus strain FORC_054]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=213340 FORC54_RS13780 WP_017420278.1 2730335..2731327(-) (rpoS) [Vibrio vulnificus strain FORC_054]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCCACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTGCGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCAAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833