Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC54_RS13660 Genome accession   NZ_CP019121
Coordinates   2708366..2708884 (-) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain FORC_054     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703366..2713884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS13635 (FORC54_2474) rimM 2703430..2703978 (-) 549 WP_101958940.1 ribosome maturation factor RimM -
  FORC54_RS13640 (FORC54_2475) rpsP 2703994..2704242 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC54_RS13645 (FORC54_2476) ffh 2704559..2705935 (-) 1377 WP_011079540.1 signal recognition particle protein -
  FORC54_RS13650 (FORC54_2477) - 2706149..2706943 (+) 795 WP_011079539.1 cytochrome C assembly family protein -
  FORC54_RS13655 (FORC54_2478) - 2707030..2708307 (+) 1278 WP_017421186.1 HlyC/CorC family transporter -
  FORC54_RS13660 (FORC54_2479) luxS 2708366..2708884 (-) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  FORC54_RS13665 (FORC54_2480) - 2708935..2709567 (-) 633 WP_086467806.1 hypothetical protein -
  FORC54_RS13670 (FORC54_2481) gshA 2709578..2711143 (-) 1566 WP_101959143.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=213337 FORC54_RS13660 WP_017421185.1 2708366..2708884(-) (luxS) [Vibrio vulnificus strain FORC_054]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=213337 FORC54_RS13660 WP_017421185.1 2708366..2708884(-) (luxS) [Vibrio vulnificus strain FORC_054]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGCTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment