Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC54_RS06505 Genome accession   NZ_CP019121
Coordinates   1385419..1386840 (-) Length   473 a.a.
NCBI ID   WP_053542688.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380419..1391840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS06475 (FORC54_1245) - 1380797..1381564 (+) 768 WP_017419940.1 phospholipase A -
  FORC54_RS06480 (FORC54_1246) - 1381804..1382193 (+) 390 WP_017419941.1 hypothetical protein -
  FORC54_RS06485 (FORC54_1247) - 1382299..1383402 (-) 1104 WP_017790524.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC54_RS06490 (FORC54_1248) - 1383605..1383997 (-) 393 WP_017419943.1 SulA-like leucine-rich domain-containing protein -
  FORC54_RS06495 (FORC54_1249) - 1384322..1384999 (-) 678 WP_038963115.1 LrgB family protein -
  FORC54_RS06500 (FORC54_1250) - 1385002..1385373 (-) 372 WP_045588948.1 CidA/LrgA family protein -
  FORC54_RS06505 (FORC54_1251) sbcB 1385419..1386840 (-) 1422 WP_053542688.1 exodeoxyribonuclease I Machinery gene
  FORC54_RS06510 (FORC54_1252) - 1386914..1387612 (-) 699 WP_101958505.1 oxidoreductase -
  FORC54_RS06515 (FORC54_1254) cobT 1388143..1389171 (+) 1029 WP_039540325.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC54_RS06520 (FORC54_1255) - 1389173..1389940 (+) 768 WP_101958506.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC54_RS06525 (FORC54_1256) cobU 1389943..1390503 (+) 561 WP_101958507.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FORC54_RS06530 (FORC54_1257) cobC 1390513..1391151 (+) 639 WP_101958508.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54772.02 Da        Isoelectric Point: 5.1722

>NTDB_id=213327 FORC54_RS06505 WP_053542688.1 1385419..1386840(-) (sbcB) [Vibrio vulnificus strain FORC_054]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=213327 FORC54_RS06505 WP_053542688.1 1385419..1386840(-) (sbcB) [Vibrio vulnificus strain FORC_054]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGACCGAACACCACTAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTGGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTTTTTAGCATGCGTCATAAGCGTA
AACTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCATTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTTTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGATTTACTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment