Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC54_RS05175 Genome accession   NZ_CP019121
Coordinates   1089682..1091082 (+) Length   466 a.a.
NCBI ID   WP_017428872.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084682..1096082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS05150 (FORC54_0985) rsxB 1085287..1085883 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  FORC54_RS05155 (FORC54_0986) rsxA 1085885..1086463 (-) 579 WP_017428869.1 electron transport complex subunit RsxA -
  FORC54_RS05170 (FORC54_0988) uvrB 1087344..1089374 (+) 2031 WP_101958444.1 excinuclease ABC subunit UvrB -
  FORC54_RS05175 (FORC54_0989) luxO 1089682..1091082 (+) 1401 WP_017428872.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC54_RS05180 (FORC54_0990) luxU 1091082..1091429 (+) 348 WP_101958445.1 quorum-sensing phosphorelay protein LuxU -
  FORC54_RS05185 (FORC54_0991) - 1091516..1092406 (-) 891 WP_038969071.1 YvcK family protein -
  FORC54_RS05190 (FORC54_0992) moaA 1092722..1093711 (+) 990 WP_017428875.1 GTP 3',8-cyclase MoaA -
  FORC54_RS05195 (FORC54_0993) moaB 1093790..1094302 (+) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  FORC54_RS05200 (FORC54_0994) moaC 1094313..1094792 (+) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  FORC54_RS05205 (FORC54_0995) moaD 1094789..1095034 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  FORC54_RS05210 (FORC54_0996) moaE 1095036..1095491 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52098.58 Da        Isoelectric Point: 6.2540

>NTDB_id=213323 FORC54_RS05175 WP_017428872.1 1089682..1091082(+) (luxO) [Vibrio vulnificus strain FORC_054]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQSVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=213323 FORC54_RS05175 WP_017428872.1 1089682..1091082(+) (luxO) [Vibrio vulnificus strain FORC_054]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGCTCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ATTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTACCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACTGGCGCAGCGACCGATCGCCAAGGGGCAGCAGAGCTCGCCGATGGAGGT
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTCCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGCTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATTGAGATCGCTTACTCGTTACTGGGTTATATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAATCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGAGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACA
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCAGGCTATCTTGATGTCAGCCCGTCGACGATTTATCGCAAGT
TACAGGCGTGGAATGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.323

95.708

0.826

Multiple sequence alignment