Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BV404_RS15480 Genome accession   NZ_CP019119
Coordinates   115961..117058 (+) Length   365 a.a.
NCBI ID   WP_020329292.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 110961..122058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS15450 - 111707..112273 (-) 567 WP_231118112.1 hypothetical protein -
  BV404_RS15455 - 112802..113119 (-) 318 WP_020329287.1 DUF496 family protein -
  BV404_RS15460 - 113309..113506 (+) 198 WP_020329288.1 hypothetical protein -
  BV404_RS15465 - 113551..114186 (+) 636 WP_020329289.1 YceH family protein -
  BV404_RS15470 - 114197..114478 (+) 282 WP_075989319.1 GIY-YIG nuclease family protein -
  BV404_RS15475 - 114592..115749 (+) 1158 WP_075989320.1 conjugal transfer protein TraF -
  BV404_RS15480 luxP 115961..117058 (+) 1098 WP_020329292.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BV404_RS15485 luxQ 117080..119647 (+) 2568 WP_075989321.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  BV404_RS15490 - 119653..120333 (-) 681 WP_075989322.1 PilZ domain-containing protein -
  BV404_RS15495 - 120468..120992 (-) 525 WP_020329295.1 hypothetical protein -
  BV404_RS15500 - 121145..121519 (-) 375 WP_020433707.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=213292 BV404_RS15480 WP_020329292.1 115961..117058(+) (luxP) [Vibrio fluvialis strain 12605]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALSEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDNSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=213292 BV404_RS15480 WP_020329292.1 115961..117058(+) (luxP) [Vibrio fluvialis strain 12605]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAGACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGACTGAATGTCAAACAGAGCAAGCCTGTGACCATTTCGGTCGTCTATCCGGGTCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGTTGGGGATTGAGTATCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CCCTCGACACTACGCGTCACCGCAAGTTTATCGAGCATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAATATC
ACCACTCCTGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTATCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGTTGGCCTCTTCTTATTACACCAAAGCCACT
CAGGAGAGCGGCTACGAAGCAACACTCAACATCCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGCGCCGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGCTGGGGCGGTGGTTCGG
CAGAACTCGAAGCGCTGAGTGAAGGGCATCTGGATGTCACTGTCATGCGAATCAACGATGACACGGGTATCGCGATGGCG
GAAGCCATCAAACGCGACCTCGAAGGCGAGGCGGTGCCTGTGGTCTATTCGGGCGATTTTGAAATCGTGACGAAAGAAGA
TAACTCGCAAAAAATCGACGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704

Multiple sequence alignment