Detailed information NTG0213281

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BV404_RS11950
• Genome accession: NZ_CP019118
• Coordinates: 2566416..2567402 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 12605
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2561416..2572402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BV404_RS11930	recX	2561460..2561918 (-)	459	WP_075988938.1	recombination regulator RecX	-
BV404_RS11935	recA	2561988..2563040 (-)	1053	WP_024374201.1	recombinase RecA	Machinery gene
BV404_RS11940	pncC	2563213..2563701 (-)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
BV404_RS11945	mutS	2563786..2566347 (+)	2562	WP_075988939.1	DNA mismatch repair protein MutS	-
BV404_RS11950	rpoS	2566416..2567402 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
BV404_RS11955	nlpD	2567474..2568409 (-)	936	WP_075988940.1	murein hydrolase activator NlpD	-
BV404_RS11960	-	2568409..2569035 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BV404_RS11965	surE	2569028..2569795 (-)	768	WP_075988941.1	5'/3'-nucleotidase SurE	-
BV404_RS11970	truD	2569788..2570834 (-)	1047	WP_075988942.1	tRNA pseudouridine(13) synthase TruD	-
BV404_RS11975	ispF	2570866..2571342 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BV404_RS11980	ispD	2571345..2572055 (-)	711	WP_044365888.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BV404_RS11985	ftsB	2572052..2572333 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=213281 BV404_RS11950 WP_020429689.1 2566416..2567402(-) (rpoS) [Vibrio fluvialis strain 12605]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=213281 BV404_RS11950 WP_020429689.1 2566416..2567402(-) (rpoS) [Vibrio fluvialis strain 12605]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAATAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTATTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGATCTGATTGAAGAGGGTAACCTCGGTCTGATTCGCGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTTCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGCTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACCGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCGGAAGAAATAGCGGTTGAGCTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAAGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAC
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGCTGGTGGCTTGGCTGGATGAGCTCAATCCAAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGTTTGTTGGGCTATGAACCTTCTACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAGGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAGGGCCTGAACATGGAA
TCGCTGTTCAACGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887