Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BV404_RS11830 Genome accession   NZ_CP019118
Coordinates   2544979..2545497 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain 12605     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539979..2550497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS11805 rimM 2540101..2540655 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  BV404_RS11810 rpsP 2540683..2540931 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  BV404_RS11815 ffh 2541157..2542539 (-) 1383 WP_020330453.1 signal recognition particle protein -
  BV404_RS11820 - 2542752..2543546 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  BV404_RS11825 - 2543636..2544910 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  BV404_RS11830 luxS 2544979..2545497 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  BV404_RS11835 - 2545523..2546128 (-) 606 WP_075988928.1 hypothetical protein -
  BV404_RS11840 gshA 2546130..2547695 (-) 1566 WP_075988929.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=213278 BV404_RS11830 WP_020330449.1 2544979..2545497(-) (luxS) [Vibrio fluvialis strain 12605]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=213278 BV404_RS11830 WP_020330449.1 2544979..2545497(-) (luxS) [Vibrio fluvialis strain 12605]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGTATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGTCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
AATGCAAGATGTACTGAAAGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGCACGGCAGCGATGC
ACTCGTTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment