Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS546_RS00555 Genome accession   NZ_CP024593
Coordinates   112278..112970 (+) Length   230 a.a.
NCBI ID   WP_099811503.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107278..117970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS546_RS00545 (CS546_00545) - 108188..111394 (-) 3207 WP_099896683.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  CS546_RS00555 (CS546_00555) radC 112278..112970 (+) 693 WP_099811503.1 DNA repair protein RadC Machinery gene
  CS546_RS00560 (CS546_00560) hcp 113194..114846 (+) 1653 WP_099811505.1 hydroxylamine reductase -
  CS546_RS11585 - 115233..115406 (+) 174 WP_165385078.1 hypothetical protein -
  CS546_RS00565 (CS546_00565) - 115975..117666 (-) 1692 WP_021662972.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25491.40 Da        Isoelectric Point: 7.0538

>NTDB_id=213233 CS546_RS00555 WP_099811503.1 112278..112970(+) (radC) [Porphyromonas gingivalis strain KCOM 2804]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISTENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=213233 CS546_RS00555 WP_099811503.1 112278..112970(+) (radC) [Porphyromonas gingivalis strain KCOM 2804]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTACCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGTACGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGTGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37

Multiple sequence alignment