Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BMF08_RS13480 Genome accession   NZ_CP019113
Coordinates   2838217..2838846 (+) Length   209 a.a.
NCBI ID   WP_072568069.1    Uniprot ID   -
Organism   Enterobacter sp. SA187     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833217..2843846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF08_RS13455 - 2833602..2835362 (-) 1761 WP_072568066.1 Lon protease family protein -
  BMF08_RS13460 matP 2835548..2836000 (+) 453 WP_072568067.1 macrodomain Ter protein MatP -
  BMF08_RS13465 ompA 2836075..2837133 (-) 1059 WP_072569430.1 porin OmpA -
  BMF08_RS13475 sulA 2837489..2837998 (-) 510 WP_072568068.1 SOS-induced cell division inhibitor SulA -
  BMF08_RS13480 sxy/tfoX 2838217..2838846 (+) 630 WP_072568069.1 TfoX/Sxy family DNA transformation protein Regulator
  BMF08_RS13485 yccS 2838831..2840957 (-) 2127 WP_072568070.1 YccS family putative transporter -
  BMF08_RS13490 - 2840976..2841422 (-) 447 WP_072568071.1 YccF domain-containing protein -
  BMF08_RS13495 helD 2841545..2843599 (+) 2055 WP_072568072.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24208.04 Da        Isoelectric Point: 9.5632

>NTDB_id=213136 BMF08_RS13480 WP_072568069.1 2838217..2838846(+) (sxy/tfoX) [Enterobacter sp. SA187]
MKDMSYQRIHESREYLSELGTIRHRTLFGGYSLSVDDTVFAMVAKGDLYLRACEQSAEYRAQHPAPLLTMMKRGRPVVLN
YYRVDDSLWQDRDTLMKLSTWSLAAAWKEKMQRLCKPRLKDLPNLNFQLEMLLWEAGVTDVLTLKKLGAKACWVRLRTLN
THLGVNVLLALEGAIEGMHQAALPAQQRQALTTWFTEFEAEHRKHQRTT

Nucleotide


Download         Length: 630 bp        

>NTDB_id=213136 BMF08_RS13480 WP_072568069.1 2838217..2838846(+) (sxy/tfoX) [Enterobacter sp. SA187]
ATGAAAGATATGTCTTATCAACGGATCCATGAATCACGTGAATACCTCTCAGAGTTGGGTACTATTCGCCATCGAACGCT
GTTCGGCGGTTACAGTCTTTCCGTTGATGATACGGTGTTCGCCATGGTGGCAAAGGGGGATCTTTACCTTCGCGCCTGTG
AGCAAAGTGCTGAATACCGTGCGCAACATCCGGCTCCGTTACTGACGATGATGAAAAGGGGCAGGCCAGTAGTACTGAAC
TATTACCGCGTTGATGACAGCTTGTGGCAGGACAGGGATACGCTGATGAAGCTTTCCACCTGGTCGCTTGCCGCCGCGTG
GAAAGAAAAGATGCAGCGCCTCTGCAAGCCCCGGCTTAAAGATCTACCGAACCTGAATTTTCAGCTGGAGATGCTGCTGT
GGGAAGCGGGCGTGACGGATGTCCTCACGCTGAAAAAACTGGGCGCTAAAGCGTGCTGGGTCAGGCTACGCACGCTTAAT
ACACATCTGGGCGTTAACGTATTGCTGGCGCTGGAGGGAGCCATCGAAGGGATGCATCAGGCCGCGCTCCCGGCGCAGCA
GCGCCAGGCATTGACGACATGGTTTACAGAGTTTGAGGCGGAGCATCGGAAACATCAGCGGACAACCTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.247

92.823

0.541

Multiple sequence alignment