Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | CTI08_RS03260 | Genome accession | NZ_CP024576 |
| Coordinates | 677739..678254 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AbPK1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 672739..683254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTI08_RS03235 (CTI08_03235) | - | 673285..674928 (+) | 1644 | WP_000281760.1 | nitrite/sulfite reductase | - |
| CTI08_RS03240 (CTI08_03240) | - | 674921..675406 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| CTI08_RS03245 (CTI08_03245) | - | 675489..675842 (+) | 354 | WP_000457787.1 | DMT family transporter | - |
| CTI08_RS03250 (CTI08_03250) | - | 675885..676328 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| CTI08_RS03255 (CTI08_03255) | - | 676455..677630 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| CTI08_RS03260 (CTI08_03260) | fimT | 677739..678254 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| CTI08_RS03265 (CTI08_03265) | omp38 | 678636..679706 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| CTI08_RS20470 | - | 679831..679989 (-) | 159 | WP_000692859.1 | hypothetical protein | - |
| CTI08_RS03275 (CTI08_03275) | - | 679993..681198 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| CTI08_RS03280 (CTI08_03280) | - | 681475..682935 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=213115 CTI08_RS03260 WP_000477147.1 677739..678254(-) (fimT) [Acinetobacter baumannii strain AbPK1]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=213115 CTI08_RS03260 WP_000477147.1 677739..678254(-) (fimT) [Acinetobacter baumannii strain AbPK1]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |