Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS058_RS19805 Genome accession   NZ_CP024477
Coordinates   4161802..4162314 (-) Length   170 a.a.
NCBI ID   WP_021018465.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 12939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4156802..4167314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS19780 - 4157169..4157969 (+) 801 WP_021018470.1 helix-turn-helix transcriptional regulator -
  CS058_RS19785 - 4158329..4159075 (+) 747 WP_021018469.1 hypothetical protein -
  CS058_RS19790 - 4159541..4159924 (-) 384 WP_021018468.1 hypothetical protein -
  CS058_RS19795 - 4160152..4160769 (-) 618 WP_021018467.1 LysE family translocator -
  CS058_RS19800 - 4160836..4161759 (+) 924 WP_021018466.1 LysR family transcriptional regulator -
  CS058_RS19805 radC 4161802..4162314 (-) 513 WP_021018465.1 JAB domain-containing protein Machinery gene
  CS058_RS19810 - 4162910..4164997 (-) 2088 Protein_3840 TonB-dependent receptor -
  CS058_RS19815 cyoE 4165236..4166126 (-) 891 WP_003082726.1 heme o synthase -
  CS058_RS19820 cyoD 4166137..4166472 (-) 336 WP_003109258.1 cytochrome o ubiquinol oxidase subunit IV -
  CS058_RS19825 cyoC 4166472..4167101 (-) 630 WP_003086858.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18718.46 Da        Isoelectric Point: 7.1869

>NTDB_id=212963 CS058_RS19805 WP_021018465.1 4161802..4162314(-) (radC) [Pseudomonas aeruginosa strain 12939]
MSQLPLLPSVDSPLMVRDGRGRYRPATADQILEAARQAIEHKMQRGDSFTSPAAVKEYLRAKLAGFEHEVFAVLFLDTQH
CLIEYAEMFRGTIDSAEVHPREVVKTALRHNAAAVVISHNHPSGNPEPSAADKVLTKQLKEVLALVDVRTLDHIIVAGSK
TTSFAERGLL

Nucleotide


Download         Length: 513 bp        

>NTDB_id=212963 CS058_RS19805 WP_021018465.1 4161802..4162314(-) (radC) [Pseudomonas aeruginosa strain 12939]
ATGTCGCAACTGCCCCTTCTTCCTTCCGTCGATTCTCCGCTCATGGTGCGCGATGGTCGCGGCCGCTATCGGCCGGCGAC
GGCCGACCAGATTCTGGAGGCTGCGCGCCAGGCCATCGAGCACAAGATGCAGCGCGGTGACTCGTTCACGTCGCCGGCGG
CGGTCAAGGAGTACCTGCGCGCCAAGCTGGCTGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCCTCGATACACAGCAT
TGCCTGATCGAGTATGCCGAGATGTTCCGCGGCACGATCGACTCGGCCGAGGTGCATCCGCGCGAAGTGGTCAAGACGGC
CCTGCGTCACAACGCGGCGGCAGTCGTCATTTCGCACAACCACCCGAGCGGGAACCCGGAGCCGAGCGCCGCAGACAAGG
TACTGACCAAGCAGCTCAAGGAGGTGCTGGCGCTGGTGGATGTCCGCACGCTGGATCACATCATCGTGGCGGGCAGCAAG
ACTACTTCATTTGCCGAACGCGGCCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(49-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.105

89.412

0.376