Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CS058_RS10360 Genome accession   NZ_CP024477
Coordinates   2150958..2151572 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain 12939     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2145958..2156572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS10335 - 2146415..2146678 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  CS058_RS10340 topA 2146769..2149375 (+) 2607 WP_034024827.1 type I DNA topoisomerase -
  CS058_RS10345 - 2149482..2150000 (+) 519 WP_003091199.1 DUF6586 family protein -
  CS058_RS10350 - 2150206..2150439 (+) 234 WP_003109483.1 hypothetical protein -
  CS058_RS10355 sulA 2150461..2150946 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  CS058_RS10360 dinR/lexA 2150958..2151572 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  CS058_RS10365 psrA 2151805..2152506 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  CS058_RS10370 nagZ 2152708..2153706 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  CS058_RS10375 - 2153718..2154455 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  CS058_RS10380 - 2154501..2155130 (-) 630 WP_034024829.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=212940 CS058_RS10360 WP_003091196.1 2150958..2151572(-) (dinR/lexA) [Pseudomonas aeruginosa strain 12939]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=212940 CS058_RS10360 WP_003091196.1 2150958..2151572(-) (dinR/lexA) [Pseudomonas aeruginosa strain 12939]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCGCGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387