Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CS058_RS09650 Genome accession   NZ_CP024477
Coordinates   1997123..1997452 (+) Length   109 a.a.
NCBI ID   WP_023084085.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 12939     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1992123..2002452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS09635 - 1992923..1993879 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  CS058_RS09640 - 1993881..1994900 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  CS058_RS09645 - 1994935..1996932 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  CS058_RS09650 comEA/comE1 1997123..1997452 (+) 330 WP_023084085.1 ComEA family DNA-binding protein Machinery gene
  CS058_RS09660 - 1997669..1998865 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  CS058_RS09665 uvrB 1999053..2001065 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11339.25 Da        Isoelectric Point: 8.0459

>NTDB_id=212935 CS058_RS09650 WP_023084085.1 1997123..1997452(+) (comEA/comE1) [Pseudomonas aeruginosa strain 12939]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=212935 CS058_RS09650 WP_023084085.1 1997123..1997452(+) (comEA/comE1) [Pseudomonas aeruginosa strain 12939]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCTGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385

Multiple sequence alignment