Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB137_RS09425 Genome accession   NZ_CP019070
Coordinates   1887786..1889135 (+) Length   449 a.a.
NCBI ID   WP_076087392.1    Uniprot ID   A0A1P8KNB1
Organism   Poseidonibacter parvus strain LPB0137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882786..1894135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB137_RS09395 (LPB137_09395) ftsY 1883039..1884106 (+) 1068 WP_083657223.1 signal recognition particle-docking protein FtsY -
  LPB137_RS09400 (LPB137_09400) - 1884144..1884713 (-) 570 WP_076087379.1 YqiA/YcfP family alpha/beta fold hydrolase -
  LPB137_RS09405 (LPB137_09405) - 1884774..1885754 (+) 981 WP_076087381.1 lipid A deacylase LpxR family protein -
  LPB137_RS09410 (LPB137_09410) - 1885830..1886450 (+) 621 WP_076087383.1 hypothetical protein -
  LPB137_RS09415 (LPB137_09415) - 1886459..1886941 (-) 483 WP_076087385.1 ribonuclease HI -
  LPB137_RS09420 (LPB137_09420) - 1886938..1887654 (-) 717 WP_076087390.1 DUF4395 domain-containing protein -
  LPB137_RS09425 (LPB137_09425) radA 1887786..1889135 (+) 1350 WP_076087392.1 DNA repair protein RadA Machinery gene
  LPB137_RS09430 (LPB137_09430) - 1889166..1889570 (-) 405 WP_076087394.1 thioesterase family protein -
  LPB137_RS09435 (LPB137_09435) ybeY 1889667..1890086 (+) 420 WP_076087396.1 rRNA maturation RNase YbeY -
  LPB137_RS09440 (LPB137_09440) - 1890088..1891008 (+) 921 WP_076087398.1 calcium/sodium antiporter -
  LPB137_RS09445 (LPB137_09445) - 1891032..1891436 (-) 405 WP_076087400.1 Fur family transcriptional regulator -
  LPB137_RS09450 (LPB137_09450) - 1891615..1892280 (+) 666 WP_076087403.1 ferritin family protein -
  LPB137_RS09455 (LPB137_09455) - 1892346..1892996 (+) 651 WP_076087405.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49183.56 Da        Isoelectric Point: 6.5195

>NTDB_id=212935 LPB137_RS09425 WP_076087392.1 1887786..1889135(+) (radA) [Poseidonibacter parvus strain LPB0137]
MAKKKTSLFECQSCGEQSTKWLGKCPSCGSWDSFIELNHDQQEVLKQTSKVINTQTKATPITQIKQDDVIRFSSNNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIASSGKKVLYVSGEESAGQIKLRANRLDANHDNVYLLSEIKLEEIQD
ELLRVDYEVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKAQSGSALTISMEGSRALILEVQALVTESTYPN
PKRSATGFDANRLNMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVVAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDMRLKEAQAQGIKKAVIAQKTKLKLSLKEFPVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=212935 LPB137_RS09425 WP_076087392.1 1887786..1889135(+) (radA) [Poseidonibacter parvus strain LPB0137]
ATGGCTAAGAAAAAAACATCACTATTTGAATGTCAATCATGTGGAGAACAGTCTACAAAATGGCTTGGAAAATGTCCAAG
TTGTGGTTCTTGGGATTCATTTATTGAGTTAAACCATGACCAACAAGAAGTACTTAAACAAACTTCAAAAGTAATAAACA
CACAAACAAAAGCAACACCTATAACACAAATCAAACAAGATGATGTAATAAGATTTTCATCAAATAATGATGAATTTGAC
TTAGTATTAGGTGGAGGAATAGTTCCTGGAAGTCTAACTTTAATTGGAGGAAGCCCAGGAGTTGGAAAGTCAACTCTACT
TTTAAAAGTTGCAGGCTCAATTGCAAGTAGTGGTAAAAAAGTATTATATGTTTCAGGGGAAGAAAGTGCTGGACAGATTA
AACTTCGTGCAAATAGACTTGATGCAAACCATGATAATGTATATTTATTAAGTGAAATAAAATTAGAAGAAATTCAAGAT
GAACTATTAAGAGTTGATTATGAAGTTGTGATTATTGATTCTATTCAAACAATTTACTCTTCAAATCTTACAAGTGCACC
AGGAAGTGTTTCTCAAGTTAGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAATCAAATATTGCAATGTTTATAA
TAGGACATATCACAAAAGATGGAAGTATAGCAGGTCCAAGAGTTTTAGAGCATATGGTTGATACTGTTTTATATTTTGAA
GGTGAATCAAGTAAAGAATTAAGAATGCTTCGAGGTTTCAAAAATAGATTTGGTTCAACATCAGAAATTGGAATTTTTGA
AATGACAGCTGAGGGTTTAATATCTGCTAAAGATATTGCTTCAAAATTCTTTGATAAATCAAAAGCACAAAGTGGTTCAG
CATTAACTATTTCAATGGAAGGAAGTCGTGCTTTAATACTTGAAGTTCAAGCACTTGTAACAGAAAGTACTTATCCAAAT
CCCAAAAGAAGCGCAACTGGTTTTGATGCAAATAGATTAAATATGCTTTTAGCACTACTTGAAAAGAAAATTGATTTACC
ACTTAATAACTATGATGTATTTATAAATATTTCAGGTGGAATAAAAATTAAAGAAAGTTCTGCAGATTTAGCAGTGGTTG
CTGCTATTATTTCATCATTTAGAGATAGACCTATTTCTAAAGAGTCTGTATTTATTGGAGAAGTTTCATTAACAGGTGAA
ATTAAAGATGTTTATTCAATTGATATGAGATTAAAAGAAGCACAAGCACAAGGTATTAAAAAAGCTGTAATTGCTCAAAA
AACTAAATTAAAACTAAGTCTAAAAGAGTTCCCTGTAGATGAAGTATCTAAAATGATAGAACTGTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8KNB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.115

96.437

0.483
  radA Streptococcus pneumoniae Rx1

47.228

100

0.474
  radA Streptococcus pneumoniae D39

47.228

100

0.474
  radA Streptococcus pneumoniae R6

47.228

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.228

100

0.474
  radA Streptococcus mitis SK321

48.252

95.546

0.461
  radA Streptococcus mitis NCTC 12261

48.252

95.546

0.461

Multiple sequence alignment