Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CS058_RS07060 Genome accession   NZ_CP024477
Coordinates   1466717..1467721 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain 12939     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461717..1472721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS07030 fghA 1461809..1462660 (+) 852 WP_003163269.1 S-formylglutathione hydrolase -
  CS058_RS07035 ispF 1462731..1463204 (+) 474 WP_003092346.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CS058_RS07040 truD 1463201..1464268 (+) 1068 WP_003163270.1 tRNA pseudouridine(13) synthase TruD -
  CS058_RS07045 surE 1464256..1465005 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  CS058_RS07050 - 1465038..1465673 (+) 636 WP_078451413.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CS058_RS07055 - 1465719..1466612 (+) 894 WP_031639387.1 peptidoglycan DD-metalloendopeptidase family protein -
  CS058_RS07060 rpoS 1466717..1467721 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  CS058_RS07065 fdxA 1468148..1468471 (-) 324 WP_003092272.1 ferredoxin FdxA -
  CS058_RS07070 mutS 1468538..1471105 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  CS058_RS07080 - 1471231..1472238 (-) 1008 WP_031638797.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=212930 CS058_RS07060 WP_003113871.1 1466717..1467721(+) (rpoS) [Pseudomonas aeruginosa strain 12939]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=212930 CS058_RS07060 WP_003113871.1 1466717..1467721(+) (rpoS) [Pseudomonas aeruginosa strain 12939]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653

Multiple sequence alignment