Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CS058_RS02190 Genome accession   NZ_CP024477
Coordinates   454483..454848 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 12939     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449483..459848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS02160 pyrR 450105..450617 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CS058_RS02165 ruvX 450729..451163 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  CS058_RS02170 - 451163..451732 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  CS058_RS02175 - 451781..452674 (-) 894 WP_003084580.1 TonB family protein -
  CS058_RS02180 gshB 452821..453774 (-) 954 WP_003100943.1 glutathione synthase -
  CS058_RS02185 pilG 454029..454436 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  CS058_RS02190 pilH 454483..454848 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  CS058_RS02195 - 454899..455435 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  CS058_RS02200 pilJ 455520..457568 (+) 2049 WP_034026349.1 chemotaxis chemoreceptor PilJ -
  CS058_RS02205 pilK 457629..458504 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=212918 CS058_RS02190 WP_003084587.1 454483..454848(+) (pilH) [Pseudomonas aeruginosa strain 12939]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=212918 CS058_RS02190 WP_003084587.1 454483..454848(+) (pilH) [Pseudomonas aeruginosa strain 12939]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364