Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PA3622 Genome accession   NC_002516
Coordinates   4057909..4058913 (-) Length   334 a.a.
NCBI ID   NP_252312.1    Uniprot ID   P45684
Organism   Pseudomonas aeruginosa PAO1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4052909..4063913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA3619 - 4053392..4054399 (+) 1008 NP_252309.1 hypothetical protein -
  PA3620 mutS 4054525..4057092 (+) 2568 NP_252310.1 DNA mismatch repair protein MutS -
  PA3621 fdxA 4057159..4057482 (+) 324 NP_252311.1 ferredoxin I -
  PA3622 rpoS 4057909..4058913 (-) 1005 NP_252312.1 RNA polymerase sigma factor RpoS Regulator
  PA3623 - 4059018..4059911 (-) 894 NP_252313.1 hypothetical protein -
  PA3624 pcm 4059957..4060592 (-) 636 NP_252314.1 protein-L-isoaspartate O-methyltransferase -
  PA3625 surE 4060625..4061374 (-) 750 NP_252315.1 5'-nucleotidase SurE -
  PA3626 - 4061362..4062429 (-) 1068 NP_252316.1 tRNA pseudouridine synthase D -
  PA3627 ygbB 4062426..4062899 (-) 474 NP_252317.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PA3628 - 4062970..4063821 (-) 852 NP_252318.1 esterase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=21288 PA3622 NP_252312.1 4057909..4058913(-) (rpoS) [Pseudomonas aeruginosa PAO1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=21288 PA3622 NP_252312.1 4057909..4058913(-) (rpoS) [Pseudomonas aeruginosa PAO1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7F0R
  PDB 7VF9
  PDB 7XL3
  PDB 7XL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653

Multiple sequence alignment