Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   A388_RS13400 Genome accession   NZ_CP024418
Coordinates   2712110..2712802 (+) Length   230 a.a.
NCBI ID   WP_059262804.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A388     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2707110..2717802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A388_RS13385 (A388_02634) - 2709929..2710735 (+) 807 WP_001237338.1 peptidoglycan DD-metalloendopeptidase family protein -
  A388_RS13390 (A388_02635) - 2710732..2711157 (-) 426 WP_001026236.1 GNAT family N-acetyltransferase -
  A388_RS13395 (A388_02636) - 2711249..2711671 (-) 423 WP_001195082.1 OsmC family protein -
  A388_RS19975 - 2711750..2711869 (-) 120 Protein_2597 hypothetical protein -
  A388_RS13400 (A388_02637) crp 2712110..2712802 (+) 693 WP_059262804.1 cAMP-activated global transcriptional regulator CRP Regulator
  A388_RS13405 (A388_02638) - 2712809..2713777 (-) 969 WP_012308653.1 IS30 family transposase -
  A388_RS13410 (A388_02639) - 2714068..2715117 (+) 1050 WP_001159805.1 NADP(H)-dependent aldo-keto reductase -
  A388_RS13415 (A388_02640) - 2715176..2715955 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  A388_RS13420 (A388_02641) - 2716072..2716389 (-) 318 WP_000776215.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25919.59 Da        Isoelectric Point: 5.0242

>NTDB_id=212830 A388_RS13400 WP_059262804.1 2712110..2712802(+) (crp) [Acinetobacter baumannii strain A388]
MTSNFSQLSTDALSTGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDED

Nucleotide


Download         Length: 693 bp        

>NTDB_id=212830 A388_RS13400 WP_059262804.1 2712110..2712802(+) (crp) [Acinetobacter baumannii strain A388]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTACGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTAG

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.565

100

0.996
  crp Vibrio cholerae strain A1552

47.343

90

0.426
  crp Haemophilus influenzae Rd KW20

48.705

83.913

0.409

Multiple sequence alignment