Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PA3140 Genome accession   NC_002516
Coordinates   3524161..3524490 (-) Length   109 a.a.
NCBI ID   NP_251830.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa PAO1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519161..3529490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA3138 uvrB 3520548..3522560 (-) 2013 NP_251828.1 excinuclease ABC subunit B Machinery gene
  PA3139 - 3522748..3523944 (+) 1197 NP_251829.1 aspartate aminotransferase -
  PA3140 comEA/comE1 3524161..3524490 (-) 330 NP_251830.1 hypothetical protein Machinery gene
  PA3141 wbpM 3524681..3526678 (-) 1998 NP_251831.1 nucleotide sugar epimerase/dehydratase WbpM -
  PA3142 - 3527429..3527734 (-) 306 NP_251832.1 hypothetical protein -
  PA3143 - 3527670..3528212 (-) 543 YP_008719764.1 hypothetical protein -
  PA3145 wbpL 3528428..3529447 (-) 1020 NP_251835.1 glycosyltransferase WbpL -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=21283 PA3140 NP_251830.1 3524161..3524490(-) (comEA/comE1) [Pseudomonas aeruginosa PAO1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=21283 PA3140 NP_251830.1 3524161..3524490(-) (comEA/comE1) [Pseudomonas aeruginosa PAO1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment