Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   BVL33_RS16075 Genome accession   NZ_CP019041
Coordinates   3342267..3342593 (-) Length   108 a.a.
NCBI ID   WP_004916964.1    Uniprot ID   S7WMH9
Organism   Acinetobacter junii strain 65     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3337267..3347593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS16055 (BVL33_16055) - 3337523..3338134 (-) 612 WP_004916950.1 FHA domain-containing protein -
  BVL33_RS16060 (BVL33_16060) gspD 3338198..3340453 (-) 2256 WP_004957392.1 type II secretion system secretin GspD -
  BVL33_RS16065 (BVL33_16065) - 3340495..3341343 (-) 849 WP_004916958.1 type II secretion system protein N -
  BVL33_RS16070 (BVL33_16070) gspN 3341343..3342086 (-) 744 WP_035336641.1 type II secretion system protein N -
  BVL33_RS16075 (BVL33_16075) hns 3342267..3342593 (-) 327 WP_004916964.1 H-NS family nucleoid-associated regulatory protein Regulator
  BVL33_RS16080 (BVL33_16080) - 3342978..3343409 (-) 432 WP_004957383.1 acyl-CoA thioesterase -
  BVL33_RS16085 (BVL33_16085) - 3343418..3344611 (-) 1194 WP_075696856.1 hypothetical protein -
  BVL33_RS16090 (BVL33_16090) - 3344618..3345448 (-) 831 WP_004916975.1 hypothetical protein -
  BVL33_RS16095 (BVL33_16095) - 3345445..3346221 (-) 777 WP_075696857.1 uroporphyrinogen-III synthase -
  BVL33_RS16100 (BVL33_16100) hemC 3346223..3347140 (-) 918 WP_004916978.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12328.97 Da        Isoelectric Point: 5.0269

>NTDB_id=212828 BVL33_RS16075 WP_004916964.1 3342267..3342593(-) (hns) [Acinetobacter junii strain 65]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAD
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=212828 BVL33_RS16075 WP_004916964.1 3342267..3342593(-) (hns) [Acinetobacter junii strain 65]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGGTACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAC
GAAACTTGGACAGGTCGCGGTAAGCAACCTCGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(13-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB S7WMH9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

89.815

100

0.898


Multiple sequence alignment