Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BVL33_RS15585 Genome accession   NZ_CP019041
Coordinates   3230258..3232483 (+) Length   741 a.a.
NCBI ID   WP_167543107.1    Uniprot ID   -
Organism   Acinetobacter junii strain 65     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3225258..3237483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS15560 (BVL33_15560) - 3225332..3226171 (+) 840 WP_004916742.1 HlyC/CorC family transporter -
  BVL33_RS15565 (BVL33_15565) lnt 3226168..3227727 (+) 1560 WP_075696836.1 apolipoprotein N-acyltransferase -
  BVL33_RS15570 (BVL33_15570) - 3227783..3228127 (-) 345 WP_075696837.1 hypothetical protein -
  BVL33_RS15575 (BVL33_15575) gspG 3228391..3228828 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  BVL33_RS15580 (BVL33_15580) gspF 3228852..3230057 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  BVL33_RS15585 (BVL33_15585) priA 3230258..3232483 (+) 2226 WP_167543107.1 primosomal protein N' Machinery gene
  BVL33_RS15590 (BVL33_15590) - 3232518..3234338 (+) 1821 WP_075696839.1 cation:proton antiporter -
  BVL33_RS15595 (BVL33_15595) - 3234458..3235333 (+) 876 WP_075696840.1 Hsp33 family molecular chaperone HslO -
  BVL33_RS15600 (BVL33_15600) - 3235587..3236552 (+) 966 WP_075696841.1 DnaJ C-terminal domain-containing protein -
  BVL33_RS15605 (BVL33_15605) - 3236564..3236890 (+) 327 WP_004957551.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84014.83 Da        Isoelectric Point: 8.4025

>NTDB_id=212824 BVL33_RS15585 WP_167543107.1 3230258..3232483(+) (priA) [Acinetobacter junii strain 65]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILAHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLVECQLEAHDFTPMPIQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQSLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLTERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLRAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=212824 BVL33_RS15585 WP_167543107.1 3230258..3232483(+) (priA) [Acinetobacter junii strain 65]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACTGAGAAGGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTTTTAAGACAGGGTCGTGCTTTAGATATTTTATTTCACCACTGGAATATTCTTGCGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAAGCATTGGAAAAAAAAGGACTGGTTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTATACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTTCTAAAGCAAGGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCTCGTTTTCATTGTGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATCTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCGCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCAGCTACACCAAGTATTGATAGTTATC
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAGCCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTCCTAAACCGTCGAGGTTACGCTCCTGTTTTACTATGTGAAAGTTGTGGGTGGCAAGCAAACT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGATGAATGCCCTGCTTGTAAACATCAAACGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTGATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATTTTGTTAGGCACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATCGACTCAGGATTATTAAGCGTAGACCCTAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTGTATTTACAAAGTTTAAGACCTGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCTGTTGCAAAACAGATGCTGACTGAACGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTGATGGAAGCAGC
ACAAGGCTTAAGAGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.461

99.73

0.812

Multiple sequence alignment