Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BVH55_RS14005 Genome accession   NZ_CP019040
Coordinates   2780399..2781151 (-) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain GH1-13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2775399..2786151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH55_RS13980 (BVH55_14010) mreC 2775835..2776698 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  BVH55_RS13985 (BVH55_14015) mreB 2776729..2777742 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BVH55_RS13990 (BVH55_14020) radC 2777834..2778529 (-) 696 WP_007408165.1 DNA repair protein RadC -
  BVH55_RS13995 (BVH55_14025) - 2778561..2779130 (-) 570 WP_077722651.1 Maf family protein -
  BVH55_RS14000 (BVH55_14030) - 2779271..2780272 (-) 1002 WP_077722652.1 SPOR domain-containing protein -
  BVH55_RS14005 (BVH55_14035) comC 2780399..2781151 (-) 753 WP_071181911.1 A24 family peptidase Machinery gene
  BVH55_RS14010 (BVH55_14040) - 2781291..2782583 (-) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BVH55_RS14015 (BVH55_14045) - 2782642..2785284 (-) 2643 WP_060674740.1 valine--tRNA ligase -
  BVH55_RS14020 (BVH55_14050) - 2785737..2785928 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=212769 BVH55_RS14005 WP_071181911.1 2780399..2781151(-) (comC) [Bacillus velezensis strain GH1-13]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=212769 BVH55_RS14005 WP_071181911.1 2780399..2781151(-) (comC) [Bacillus velezensis strain GH1-13]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment