Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BVH55_RS08425 Genome accession   NZ_CP019040
Coordinates   1612206..1613105 (+) Length   299 a.a.
NCBI ID   WP_077722193.1    Uniprot ID   -
Organism   Bacillus velezensis strain GH1-13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1607206..1618105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH55_RS08405 (BVH55_08425) - 1607897..1609600 (+) 1704 WP_077722192.1 glycosyl transferase -
  BVH55_RS08410 (BVH55_08430) - 1609597..1609878 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  BVH55_RS08415 (BVH55_08435) sucC 1610053..1611210 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BVH55_RS08420 (BVH55_08440) sucD 1611239..1612141 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BVH55_RS08425 (BVH55_08445) dprA 1612206..1613105 (+) 900 WP_077722193.1 DNA-processing protein DprA Machinery gene
  BVH55_RS08430 (BVH55_08450) topA 1613287..1615362 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  BVH55_RS08435 (BVH55_08455) trmFO 1615427..1616734 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BVH55_RS08440 (BVH55_08460) xerC 1616804..1617721 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32862.05 Da        Isoelectric Point: 8.4593

>NTDB_id=212746 BVH55_RS08425 WP_077722193.1 1612206..1613105(+) (dprA) [Bacillus velezensis strain GH1-13]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTVPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=212746 BVH55_RS08425 WP_077722193.1 1612206..1613105(+) (dprA) [Bacillus velezensis strain GH1-13]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGAAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment