Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BVH55_RS07550 Genome accession   NZ_CP019040
Coordinates   1398373..1398657 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain GH1-13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393373..1403657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH55_RS07530 (BVH55_07550) - 1394619..1395527 (+) 909 WP_077722151.1 ketopantoate reductase family protein -
  BVH55_RS07535 (BVH55_07555) - 1395557..1396789 (-) 1233 WP_070081754.1 aminopeptidase -
  BVH55_RS20765 - 1396890..1397024 (-) 135 WP_003154559.1 protein YkpC -
  BVH55_RS07540 (BVH55_07560) mreBH 1397096..1398103 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BVH55_RS07550 (BVH55_07570) abrB 1398373..1398657 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BVH55_RS07555 (BVH55_07575) - 1398830..1400134 (+) 1305 WP_077722152.1 ATP-binding protein -
  BVH55_RS07560 (BVH55_07580) - 1400136..1400963 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase family protein -
  BVH55_RS07565 (BVH55_07585) ktrC 1401004..1401669 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BVH55_RS07570 (BVH55_07590) ade 1401818..1403551 (+) 1734 WP_077722154.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=212745 BVH55_RS07550 WP_024085249.1 1398373..1398657(+) (abrB) [Bacillus velezensis strain GH1-13]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=212745 BVH55_RS07550 WP_024085249.1 1398373..1398657(+) (abrB) [Bacillus velezensis strain GH1-13]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment