Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CRH16_RS04985 Genome accession   NZ_CP024412
Coordinates   921335..923611 (-) Length   758 a.a.
NCBI ID   WP_112063210.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH0104     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916335..928611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS04950 tadA 917819..918355 (+) 537 WP_043894448.1 tRNA adenosine(34) deaminase TadA -
  CRH16_RS04955 yfbV 918337..918771 (-) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  CRH16_RS04960 - 918950..919678 (+) 729 WP_112062926.1 hypothetical protein -
  CRH16_RS04965 - 919687..920250 (+) 564 WP_005711560.1 septation protein A -
  CRH16_RS04970 yciA 920234..920674 (+) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  CRH16_RS04975 - 920686..920982 (+) 297 WP_021110790.1 YciI family protein -
  CRH16_RS12315 - 921075..921194 (+) 120 Protein_941 NAD-dependent epimerase/dehydratase family protein -
  CRH16_RS04985 rec2 921335..923611 (-) 2277 WP_112063210.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CRH16_RS04990 uspA 923926..924351 (+) 426 WP_005711551.1 universal stress protein UspA -
  CRH16_RS04995 alaS 924577..927204 (+) 2628 WP_112062927.1 alanine--tRNA ligase -
  CRH16_RS05000 csrA 927268..927453 (+) 186 WP_005711547.1 carbon storage regulator CsrA -
  CRH16_RS05005 galU 927633..928520 (+) 888 WP_005711543.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86242.71 Da        Isoelectric Point: 9.0154

>NTDB_id=212742 CRH16_RS04985 WP_112063210.1 921335..923611(-) (rec2) [Glaesserella parasuis strain SH0104]
MSIDRVCLMLFFGLLPLIVLPASWLGYVMVFSLALALWGVWRGKLGILLLGGVLAVSYAQIIQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELVLKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTASFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAVKAGQWL
LLRFRCLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLILIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHTQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=212742 CRH16_RS04985 WP_112063210.1 921335..923611(-) (rec2) [Glaesserella parasuis strain SH0104]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGATGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATACAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCAGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGTATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCTCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAAATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGTGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTGTCTAAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCACTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTACTATTAGTCGTCTTTGATCCGCTGACGTTACTG
TCTGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAATTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTTTAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTAGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTAGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGTCAAACATTGCTCGCTCACACCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-685)

Competence protein (Competence)

(191-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.494

95.383

0.396