Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   A5960_RS00025 Genome accession   NZ_CP024289
Coordinates   2725..3717 (+) Length   330 a.a.
NCBI ID   WP_099528285.1    Uniprot ID   -
Organism   Escherichia coli O178:H19 strain 2012C-4431     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5960_RS00010 surE 2..763 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  A5960_RS00015 pcm 757..1383 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  A5960_RS00020 nlpD 1568..2662 (+) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  A5960_RS00025 rpoS 2725..3717 (+) 993 WP_099528285.1 RNA polymerase sigma factor RpoS Regulator
  A5960_RS00030 - 3838..4245 (-) 408 WP_001208072.1 MarR family transcriptional regulator -
  A5960_RS00035 - 4392..4985 (+) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  A5960_RS00040 - 4985..6412 (+) 1428 WP_099528286.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  A5960_RS00045 - 6423..6659 (+) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  A5960_RS00050 ygbN 6698..8062 (-) 1365 WP_000104439.1 GntP family transporter -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37919.80 Da        Isoelectric Point: 4.5229

>NTDB_id=212645 A5960_RS00025 WP_099528285.1 2725..3717(+) (rpoS) [Escherichia coli O178:H19 strain 2012C-4431]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQCEVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=212645 A5960_RS00025 WP_099528285.1 2725..3717(+) (rpoS) [Escherichia coli O178:H19 strain 2012C-4431]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGTGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment