Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS031_RS07745 Genome accession   NZ_CP024278
Coordinates   1488954..1489430 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain ATCC 43896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1483954..1494430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS031_RS07715 - 1485072..1485811 (-) 740 Protein_1436 IS3-like element IS629 family transposase -
  CS031_RS07720 - 1485861..1487225 (+) 1365 Protein_1437 IS66-like element ISEc23 family transposase -
  CS031_RS27700 - 1487346..1487426 (-) 81 Protein_1438 hypothetical protein -
  CS031_RS07725 - 1487526..1487678 (-) 153 Protein_1439 DUF5983 family protein -
  CS031_RS07730 - 1487675..1488049 (-) 375 WP_000854762.1 TA system toxin CbtA family protein -
  CS031_RS07735 - 1488139..1488507 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CS031_RS07740 - 1488670..1488891 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  CS031_RS07745 radC 1488954..1489430 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  CS031_RS07750 - 1489446..1489919 (-) 474 WP_000855059.1 antirestriction protein -
  CS031_RS07760 - 1490261..1491079 (-) 819 WP_001234652.1 DUF932 domain-containing protein -
  CS031_RS07770 - 1491197..1491392 (-) 196 Protein_1446 DUF905 family protein -
  CS031_RS07775 - 1491463..1494309 (-) 2847 WP_001760116.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=212586 CS031_RS07745 WP_001186774.1 1488954..1489430(-) (radC) [Escherichia coli strain ATCC 43896]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=212586 CS031_RS07745 WP_001186774.1 1488954..1489430(-) (radC) [Escherichia coli strain ATCC 43896]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399