Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG40_RS21245 Genome accession   NZ_CP024275
Coordinates   4069004..4069480 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli O6:H16 strain M9682-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4064004..4074480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG40_RS21215 - 4064419..4067265 (+) 2847 WP_000820580.1 Ag43/Cah family autotransporter adhesin -
  COG40_RS21235 - 4067591..4068412 (+) 822 WP_001706654.1 DUF932 domain-containing protein -
  COG40_RS21240 - 4068504..4068989 (+) 486 WP_000206659.1 antirestriction protein -
  COG40_RS21245 radC 4069004..4069480 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  COG40_RS21250 - 4069543..4069764 (+) 222 WP_000692307.1 DUF987 domain-containing protein -
  COG40_RS21255 - 4069783..4070427 (+) 645 WP_000086754.1 hypothetical protein -
  COG40_RS21260 - 4070477..4070845 (+) 369 WP_001285298.1 type IV toxin-antitoxin system YeeU family antitoxin -
  COG40_RS21265 - 4070935..4071312 (+) 378 WP_000854743.1 TA system toxin CbtA family protein -
  COG40_RS21270 - 4071309..4071797 (+) 489 WP_000761693.1 DUF5983 family protein -
  COG40_RS21275 - 4071809..4072006 (+) 198 WP_000839275.1 DUF957 domain-containing protein -
  COG40_RS21280 - 4072103..4072941 (+) 839 Protein_3938 DUF4942 domain-containing protein -
  COG40_RS26695 rhuM 4073179..4073340 (+) 162 Protein_3939 RhuM family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=212544 COG40_RS21245 WP_001186774.1 4069004..4069480(+) (radC) [Escherichia coli O6:H16 strain M9682-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=212544 COG40_RS21245 WP_001186774.1 4069004..4069480(+) (radC) [Escherichia coli O6:H16 strain M9682-C1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399