Detailed information NTG0212523

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: COG40_RS15590
• Genome accession: NZ_CP024275
• Coordinates: 2991534..2992526 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O6:H16 strain M9682-C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2986534..2997526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COG40_RS15570	otnK	2987311..2988573 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
COG40_RS15575	ygbL	2988570..2989208 (+)	639	WP_001278994.1	aldolase	-
COG40_RS15580	ygbM	2989213..2989989 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
COG40_RS15585	ygbN	2990078..2991440 (+)	1363	Protein_2883	GntP family transporter	-
COG40_RS15590	rpoS	2991534..2992526 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
COG40_RS15595	nlpD	2992589..2993683 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
COG40_RS15600	pcm	2993868..2994494 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
COG40_RS15605	surE	2994488..2995249 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
COG40_RS15610	truD	2995230..2996279 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
COG40_RS15615	ispF	2996276..2996755 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
COG40_RS15620	ispD	2996755..2997465 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=212523 COG40_RS15590 WP_000081550.1 2991534..2992526(-) (rpoS) [Escherichia coli O6:H16 strain M9682-C1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212523 COG40_RS15590 WP_000081550.1 2991534..2992526(-) (rpoS) [Escherichia coli O6:H16 strain M9682-C1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715