Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   COG40_RS15315 Genome accession   NZ_CP024275
Coordinates   2939218..2939733 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O6:H16 strain M9682-C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934218..2944733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG40_RS15290 ygaZ 2934617..2935354 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  COG40_RS15295 ygaH 2935344..2935679 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  COG40_RS15300 emrR 2935770..2936300 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  COG40_RS15305 emrA 2936427..2937599 (+) 1173 WP_047608233.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  COG40_RS15310 emrB 2937616..2939154 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  COG40_RS15315 luxS 2939218..2939733 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  COG40_RS15320 gshA 2939883..2941439 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  COG40_RS15325 yqaA 2941512..2941940 (-) 429 WP_001287454.1 YqaA family protein -
  COG40_RS15330 yqaB 2941937..2942503 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  COG40_RS15360 csrA 2943961..2944146 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=212520 COG40_RS15315 WP_001130211.1 2939218..2939733(-) (luxS) [Escherichia coli O6:H16 strain M9682-C1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=212520 COG40_RS15315 WP_001130211.1 2939218..2939733(-) (luxS) [Escherichia coli O6:H16 strain M9682-C1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment