Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BE939_RS17925 Genome accession   NZ_CP019008
Coordinates   3250577..3251206 (-) Length   209 a.a.
NCBI ID   WP_078233016.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ159     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245577..3256206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE939_RS17910 (BE939_18385) helD 3245819..3247873 (-) 2055 WP_001295938.1 DNA helicase IV -
  BE939_RS17915 (BE939_18390) yccF 3247996..3248442 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BE939_RS17920 (BE939_18395) yccS 3248452..3250614 (+) 2163 WP_000875041.1 YccS family putative transporter -
  BE939_RS17925 (BE939_18400) sxy/tfoX 3250577..3251206 (-) 630 WP_078233016.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BE939_RS17930 (BE939_18405) sulA 3251425..3251934 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  BE939_RS17940 (BE939_18415) ompA 3252290..3253342 (+) 1053 WP_001346420.1 porin OmpA -
  BE939_RS17945 (BE939_18420) matP 3253417..3253869 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  BE939_RS17950 (BE939_18425) ycbZ 3254055..3255815 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24178.05 Da        Isoelectric Point: 9.0428

>NTDB_id=212512 BE939_RS17925 WP_078233016.1 3250577..3251206(-) (sxy/tfoX) [Escherichia coli strain Ecol_AZ159]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKIQFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=212512 BE939_RS17925 WP_078233016.1 3250577..3251206(-) (sxy/tfoX) [Escherichia coli strain Ecol_AZ159]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCAGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment