Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BE948_RS14635 Genome accession   NZ_CP019005
Coordinates   2374175..2374804 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Ecol_AZ155     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2369175..2379804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE948_RS14610 (BE948_14980) ycbZ 2369576..2371336 (-) 1761 Protein_2195 Lon protease family protein -
  BE948_RS14615 (BE948_14985) matP 2371522..2371974 (+) 453 WP_078207539.1 macrodomain Ter protein MatP -
  BE948_RS14620 (BE948_14990) ompA 2372050..2373090 (-) 1041 WP_001400178.1 porin OmpA -
  BE948_RS14630 (BE948_15000) sulA 2373447..2373956 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BE948_RS14635 (BE948_15005) sxy/tfoX 2374175..2374804 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BE948_RS14640 (BE948_15010) yccS 2374767..2376929 (-) 2163 WP_000875058.1 YccS family putative transporter -
  BE948_RS14645 (BE948_15015) yccF 2376939..2377385 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BE948_RS14650 (BE948_15020) helD 2377508..2379562 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=212482 BE948_RS14635 WP_000839153.1 2374175..2374804(+) (sxy/tfoX) [Escherichia coli strain Ecol_AZ155]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=212482 BE948_RS14635 WP_000839153.1 2374175..2374804(+) (sxy/tfoX) [Escherichia coli strain Ecol_AZ155]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment