Detailed information NTG0212439

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A5T63_RS15010
• Genome accession: NZ_CP024273
• Coordinates: 2912323..2913315 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain F9792
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2907323..2918315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A5T63_RS14985	ygbN	2907978..2909342 (+)	1365	WP_032201353.1	GntP family transporter	-
A5T63_RS14990	-	2909382..2909618 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A5T63_RS14995	-	2909629..2911056 (-)	1428	WP_032201352.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A5T63_RS15000	-	2911056..2911649 (-)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A5T63_RS15005	-	2911796..2912203 (+)	408	WP_001718752.1	MarR family transcriptional regulator	-
A5T63_RS15010	rpoS	2912323..2913315 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A5T63_RS15015	nlpD	2913378..2914472 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
A5T63_RS15020	pcm	2914657..2915283 (-)	627	WP_001718755.1	protein-L-isoaspartate O-methyltransferase	-
A5T63_RS15025	surE	2915277..2916038 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A5T63_RS15030	truD	2916019..2917068 (-)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
A5T63_RS15035	ispF	2917065..2917544 (-)	480	WP_001718756.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A5T63_RS15040	ispD	2917544..2918254 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=212439 A5T63_RS15010 WP_000081550.1 2912323..2913315(-) (rpoS) [Escherichia coli strain F9792]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212439 A5T63_RS15010 WP_000081550.1 2912323..2913315(-) (rpoS) [Escherichia coli strain F9792]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTTCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715