Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BE962_RS14280 Genome accession   NZ_CP018995
Coordinates   2284602..2285231 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Ecol_AZ147     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2279602..2290231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE962_RS14265 (BE962_14670) helD 2279844..2281898 (-) 2055 WP_001515148.1 DNA helicase IV -
  BE962_RS14270 (BE962_14675) yccF 2282021..2282467 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BE962_RS14275 (BE962_14680) yccS 2282477..2284639 (+) 2163 WP_000875061.1 YccS family putative transporter -
  BE962_RS14280 (BE962_14685) sxy/tfoX 2284602..2285231 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BE962_RS14285 (BE962_14690) sulA 2285450..2285959 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BE962_RS14295 (BE962_14700) ompA 2286316..2287356 (+) 1041 WP_000750416.1 porin OmpA -
  BE962_RS14300 (BE962_14705) matP 2287432..2287884 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BE962_RS14305 (BE962_14710) ycbZ 2288070..2289830 (+) 1761 WP_078232770.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=212437 BE962_RS14280 WP_000839153.1 2284602..2285231(-) (sxy/tfoX) [Escherichia coli strain Ecol_AZ147]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=212437 BE962_RS14280 WP_000839153.1 2284602..2285231(-) (sxy/tfoX) [Escherichia coli strain Ecol_AZ147]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment