Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG38_RS17160 Genome accession   NZ_CP024263
Coordinates   3329420..3330088 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O169:H41 strain F6326-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3324420..3335088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG38_RS17130 rfaQ 3324598..3325656 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  COG38_RS17135 waaA 3326069..3327346 (+) 1278 WP_000891560.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  COG38_RS17140 coaD 3327354..3327833 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  COG38_RS17145 mutM 3327872..3328681 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  COG38_RS17150 rpmG 3328779..3328946 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  COG38_RS17155 rpmB 3328967..3329203 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  COG38_RS17160 radC 3329420..3330088 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  COG38_RS17165 coaBC 3330260..3331480 (+) 1221 WP_001614110.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  COG38_RS17170 dut 3331458..3331916 (+) 459 WP_000976070.1 dUTP diphosphatase -
  COG38_RS17175 slmA 3332023..3332619 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  COG38_RS17180 pyrE 3332656..3333297 (-) 642 WP_000806154.1 orotate phosphoribosyltransferase -
  COG38_RS17185 rph 3333363..3334079 (-) 717 WP_001614112.1 ribonuclease PH -
  COG38_RS17195 yicC 3334206..3335069 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=212290 COG38_RS17160 WP_001297375.1 3329420..3330088(-) (radC) [Escherichia coli O169:H41 strain F6326-C1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=212290 COG38_RS17160 WP_001297375.1 3329420..3330088(-) (radC) [Escherichia coli O169:H41 strain F6326-C1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAATTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496