Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BE963_RS18625 Genome accession   NZ_CP018957
Coordinates   3182464..3183093 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Ecol_316     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177464..3188093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE963_RS18600 (BE963_19075) ycbZ 3177852..3179612 (-) 1761 WP_001586869.1 Lon protease family protein -
  BE963_RS18605 (BE963_19080) matP 3179798..3180250 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BE963_RS18610 (BE963_19085) ompA 3180327..3181379 (-) 1053 WP_001305912.1 porin OmpA -
  BE963_RS18620 (BE963_19095) sulA 3181736..3182245 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BE963_RS18625 (BE963_19100) sxy/tfoX 3182464..3183093 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BE963_RS18630 (BE963_19105) yccS 3183056..3185218 (-) 2163 WP_000875037.1 YccS family putative transporter -
  BE963_RS18635 (BE963_19110) yccF 3185228..3185674 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BE963_RS18640 (BE963_19115) helD 3185797..3187851 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=212283 BE963_RS18625 WP_000839153.1 3182464..3183093(+) (sxy/tfoX) [Escherichia coli strain Ecol_316]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=212283 BE963_RS18625 WP_000839153.1 3182464..3183093(+) (sxy/tfoX) [Escherichia coli strain Ecol_316]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment