Detailed information NTG0212273

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: COG38_RS12250
• Genome accession: NZ_CP024263
• Coordinates: 2367622..2368614 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O169:H41 strain F6326-C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2362622..2373614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COG38_RS12225	ygbN	2363277..2364641 (+)	1365	WP_032201353.1	GntP family transporter	-
COG38_RS12230	-	2364681..2364917 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
COG38_RS12235	-	2364928..2366355 (-)	1428	WP_032201352.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
COG38_RS12240	-	2366355..2366948 (-)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
COG38_RS12245	-	2367095..2367502 (+)	408	WP_001718752.1	MarR family transcriptional regulator	-
COG38_RS12250	rpoS	2367622..2368614 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
COG38_RS12255	nlpD	2368677..2369771 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
COG38_RS12260	pcm	2369956..2370582 (-)	627	WP_001718755.1	protein-L-isoaspartate O-methyltransferase	-
COG38_RS12265	surE	2370576..2371337 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
COG38_RS12270	truD	2371318..2372367 (-)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
COG38_RS12275	ispF	2372364..2372843 (-)	480	WP_001718756.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
COG38_RS12280	ispD	2372843..2373553 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=212273 COG38_RS12250 WP_000081550.1 2367622..2368614(-) (rpoS) [Escherichia coli O169:H41 strain F6326-C1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212273 COG38_RS12250 WP_000081550.1 2367622..2368614(-) (rpoS) [Escherichia coli O169:H41 strain F6326-C1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTTCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715