Detailed information NTG0212232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A4V61_RS21580
• Genome accession: NZ_CP024260
• Coordinates: 4102979..4103971 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain F5656C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4097979..4108971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4V61_RS21550	ispD	4098040..4098750 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A4V61_RS21555	ispF	4098750..4099229 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A4V61_RS21560	truD	4099226..4100275 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
A4V61_RS21565	surE	4100256..4101017 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A4V61_RS21570	pcm	4101011..4101637 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A4V61_RS21575	nlpD	4101822..4102916 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
A4V61_RS21580	rpoS	4102979..4103971 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A4V61_RS21585	ygbN	4104065..4105427 (-)	1363	Protein_3943	GntP family transporter	-
A4V61_RS21590	ygbM	4105516..4106292 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
A4V61_RS21595	ygbL	4106297..4106935 (-)	639	WP_001278994.1	aldolase	-
A4V61_RS21600	otnK	4106932..4108194 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=212232 A4V61_RS21580 WP_000081550.1 4102979..4103971(+) (rpoS) [Escherichia coli strain F5656C1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212232 A4V61_RS21580 WP_000081550.1 4102979..4103971(+) (rpoS) [Escherichia coli strain F5656C1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715