Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4V61_RS16565 Genome accession   NZ_CP024260
Coordinates   3137530..3138198 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain F5656C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3132530..3143198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V61_RS16530 yicC 3132549..3133412 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  A4V61_RS16540 rph 3133539..3134255 (+) 717 WP_001247089.1 ribonuclease PH -
  A4V61_RS16545 pyrE 3134321..3134962 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  A4V61_RS16550 slmA 3134999..3135595 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A4V61_RS16555 dut 3135702..3136160 (-) 459 WP_000976070.1 dUTP diphosphatase -
  A4V61_RS16560 coaBC 3136138..3137358 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A4V61_RS16565 radC 3137530..3138198 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A4V61_RS16570 rpmB 3138415..3138651 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  A4V61_RS16575 rpmG 3138672..3138839 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  A4V61_RS16580 mutM 3138937..3139746 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A4V61_RS16585 coaD 3139785..3140264 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  A4V61_RS16590 waaA 3140272..3141549 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A4V61_RS16595 rfaQ 3141962..3143020 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=212213 A4V61_RS16565 WP_001297375.1 3137530..3138198(+) (radC) [Escherichia coli strain F5656C1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=212213 A4V61_RS16565 WP_001297375.1 3137530..3138198(+) (radC) [Escherichia coli strain F5656C1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496