Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4V61_RS13370 Genome accession   NZ_CP024260
Coordinates   2517083..2517559 (+) Length   158 a.a.
NCBI ID   WP_032328266.1    Uniprot ID   -
Organism   Escherichia coli strain F5656C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2512083..2522559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V61_RS13335 - 2512616..2513548 (-) 933 WP_021538213.1 hypothetical protein -
  A4V61_RS13340 - 2513655..2514539 (+) 885 WP_000010388.1 GTPase -
  A4V61_RS26690 - 2514658..2515335 (+) 678 Protein_2444 hypothetical protein -
  A4V61_RS13350 - 2515341..2515574 (+) 234 WP_001278281.1 DUF905 family protein -
  A4V61_RS13360 - 2515673..2516491 (+) 819 WP_001234693.1 DUF932 domain-containing protein -
  A4V61_RS13365 - 2516583..2517068 (+) 486 WP_000206660.1 antirestriction protein -
  A4V61_RS13370 radC 2517083..2517559 (+) 477 WP_032328266.1 RadC family protein Machinery gene
  A4V61_RS13375 - 2517628..2517849 (+) 222 WP_000692295.1 DUF987 domain-containing protein -
  A4V61_RS13380 - 2517929..2518297 (+) 369 WP_024183700.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A4V61_RS13385 - 2518386..2518763 (+) 378 WP_032328463.1 TA system toxin CbtA family protein -
  A4V61_RS13390 - 2518760..2519248 (+) 489 WP_032328344.1 DUF5983 family protein -
  A4V61_RS13395 - 2519260..2519457 (+) 198 WP_000839291.1 DUF957 domain-containing protein -
  A4V61_RS13400 - 2519542..2520408 (+) 867 WP_001280426.1 DUF4942 domain-containing protein -
  A4V61_RS13405 - 2520480..2520743 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  A4V61_RS13410 - 2520740..2521066 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17662.29 Da        Isoelectric Point: 7.2020

>NTDB_id=212191 A4V61_RS13370 WP_032328266.1 2517083..2517559(+) (radC) [Escherichia coli strain F5656C1]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILSMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=212191 A4V61_RS13370 WP_032328266.1 2517083..2517559(+) (radC) [Escherichia coli strain F5656C1]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAGCATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405