Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BEI53_RS09330 Genome accession   NZ_CP018935
Coordinates   1720317..1721444 (-) Length   375 a.a.
NCBI ID   WP_000470753.1    Uniprot ID   Q6I535
Organism   Bacillus cereus strain JEM-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1715317..1726444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI53_RS09320 gyrA 1715796..1718267 (-) 2472 WP_072180241.1 DNA gyrase subunit A -
  BEI53_RS09325 gyrB 1718356..1720278 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BEI53_RS09330 recF 1720317..1721444 (-) 1128 WP_000470753.1 DNA replication/repair protein RecF Machinery gene
  BEI53_RS09335 yaaA 1721457..1721669 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  BEI53_RS09340 dnaN 1721797..1722936 (-) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  BEI53_RS09345 dnaA 1723115..1724455 (-) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  BEI53_RS09350 rpmH 1725021..1725155 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  BEI53_RS09355 rnpA 1725232..1725591 (+) 360 WP_000726628.1 ribonuclease P protein component -
  BEI53_RS09360 spoIIIJ 1725631..1726398 (+) 768 WP_000727748.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.71 Da        Isoelectric Point: 6.9850

>NTDB_id=212188 BEI53_RS09330 WP_000470753.1 1720317..1721444(-) (recF) [Bacillus cereus strain JEM-2]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=212188 BEI53_RS09330 WP_000470753.1 1720317..1721444(-) (recF) [Bacillus cereus strain JEM-2]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6I535

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment