Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4V61_RS00650 Genome accession   NZ_CP024260
Coordinates   144193..144669 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain F5656C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139193..149669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V61_RS00605 sbmC 139686..140159 (+) 474 WP_001394439.1 DNA gyrase inhibitor SbmC -
  A4V61_RS00610 yeeA 140357..141415 (+) 1059 WP_001200905.1 FUSC family protein -
  A4V61_RS00615 tmaR 141587..141916 (+) 330 WP_001374017.1 DUF496 family protein -
  A4V61_RS00620 - 142017..142199 (-) 183 WP_024169664.1 EutP/PduV family microcompartment system protein -
  A4V61_RS00625 - 142253..142399 (+) 147 Protein_123 transposase domain-containing protein -
  A4V61_RS25920 - 142688..142768 (-) 81 Protein_124 hypothetical protein -
  A4V61_RS00630 yeeW 142814..143008 (-) 195 WP_000988599.1 DUF5983 family protein -
  A4V61_RS00635 - 143070..143378 (-) 309 Protein_126 TA system toxin CbtA family protein -
  A4V61_RS00640 cbeA 143467..143835 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A4V61_RS00645 yeeT 143909..144130 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A4V61_RS00650 radC 144193..144669 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  A4V61_RS00655 - 144685..145164 (-) 480 WP_000860076.1 antirestriction protein -
  A4V61_RS00660 - 145246..146067 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  A4V61_RS26545 - 146288..146365 (-) 78 Protein_132 hypothetical protein -
  A4V61_RS26550 - 146357..146545 (+) 189 Protein_133 IS4 family transposase -
  A4V61_RS26555 - 146542..146715 (+) 174 Protein_134 cobalamin biosynthesis protein -
  A4V61_RS00680 cobU 146849..147395 (+) 547 Protein_135 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  A4V61_RS00685 cobS 147392..148135 (+) 744 WP_032328575.1 adenosylcobinamide-GDP ribazoletransferase -
  A4V61_RS00690 cobT 148147..149226 (+) 1080 WP_001193822.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=212162 A4V61_RS00650 WP_001186773.1 144193..144669(-) (radC) [Escherichia coli strain F5656C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=212162 A4V61_RS00650 WP_001186773.1 144193..144669(-) (radC) [Escherichia coli strain F5656C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392